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spot colocalization function  (Oxford Instruments)


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    Structured Review

    Oxford Instruments spot colocalization function
    The nuclear translocation of S protein and S mRNA includes both the outer surface and inside of the nucleus. Separate slides (see ) were imaged under a Leica Stellaris confocal microscope (Leica) using a 63x oil objective. The images were then deconvolved using Huygen Essential deconvolution software (Scientific Volume Imaging). Using the surface rendering function of an image processing IMARIS software. (A) S mRNA (red) on the nuclear surface (top) and inside the nucleus (bottom). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (B) S protein (green) on the nuclear surface (top image) and inside the nucleus (bottom image). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (C) The total distribution of S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment. (D) The total <t>colocalization</t> between S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment.
    Spot Colocalization Function, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 44244 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/spot+colocalization+function/Imaris/pmc09909199-44-21-25
    Average 99 stars, based on 44244 article reviews
    spot colocalization function - by Bioz Stars, 2026-09
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    Images

    1) Product Images from "Nuclear translocation of spike mRNA and protein is a novel feature of SARS-CoV-2"

    Article Title: Nuclear translocation of spike mRNA and protein is a novel feature of SARS-CoV-2

    Journal: Frontiers in Microbiology

    doi: 10.3389/fmicb.2023.1073789

    The nuclear translocation of S protein and S mRNA includes both the outer surface and inside of the nucleus. Separate slides (see ) were imaged under a Leica Stellaris confocal microscope (Leica) using a 63x oil objective. The images were then deconvolved using Huygen Essential deconvolution software (Scientific Volume Imaging). Using the surface rendering function of an image processing IMARIS software. (A) S mRNA (red) on the nuclear surface (top) and inside the nucleus (bottom). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (B) S protein (green) on the nuclear surface (top image) and inside the nucleus (bottom image). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (C) The total distribution of S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment. (D) The total colocalization between S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment.
    Figure Legend Snippet: The nuclear translocation of S protein and S mRNA includes both the outer surface and inside of the nucleus. Separate slides (see ) were imaged under a Leica Stellaris confocal microscope (Leica) using a 63x oil objective. The images were then deconvolved using Huygen Essential deconvolution software (Scientific Volume Imaging). Using the surface rendering function of an image processing IMARIS software. (A) S mRNA (red) on the nuclear surface (top) and inside the nucleus (bottom). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (B) S protein (green) on the nuclear surface (top image) and inside the nucleus (bottom image). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (C) The total distribution of S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment. (D) The total colocalization between S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment.

    Techniques Used: Translocation Assay, Microscopy, Software, Imaging

    Colocalization between S mRNA and S protein inside infected cells. The images (see ) were analyzed by using the surface rendering and colocalization features of IMARIS. S protein and S mRNA distribution and colocalization in the cytoplasm (top panel), on the nuclear surface (middle panel) and inside the nucleus (bottom panel). The specific region of colocalization is indicated by a white spot. Scale bar 0.5 μm.
    Figure Legend Snippet: Colocalization between S mRNA and S protein inside infected cells. The images (see ) were analyzed by using the surface rendering and colocalization features of IMARIS. S protein and S mRNA distribution and colocalization in the cytoplasm (top panel), on the nuclear surface (middle panel) and inside the nucleus (bottom panel). The specific region of colocalization is indicated by a white spot. Scale bar 0.5 μm.

    Techniques Used: Infection

    Related Articles

    Software:

    Article Title: Nuclear translocation of spike mRNA and protein is a novel feature of SARS-CoV-2.
    Article Snippet: .. To confirm the physical apposition between S mRNA and the nucleus by comparing their distributions in fluorescent images, we used the spot-to-spot colocalization function in Imaris image analysis software (Oxford Instruments). ..

    Article Title: Nuclear translocation of spike mRNA and protein is a novel feature of SARS-CoV-2
    Article Snippet: .. To confirm the physical apposition between S mRNA and the nucleus by comparing their distributions in fluorescent images, we used the spot-to-spot colocalization function in Imaris image analysis software (Oxford Instruments). ..

    Article Title: Nuclear translocation of spike mRNA and protein is a novel pathogenic feature of SARS-CoV-2
    Article Snippet: .. To confirm the physical apposition between S mRNA and the nucleus by comparing their distributions in fluorescent images, we used the spot-to-spot colocalization function in Imaris image analysis software (Oxford Instruments). ..

    Double Immunostaining:

    Article Title: Mapping the connectivity of serotonin transporter immunoreactive axons to excitatory and inhibitory neurochemical synapses in the mouse limbic brain
    Article Snippet: .. Fig. 7 3D-reconstruction and quantification of inhibitory 5-HTergic triads throughout the limbic brain. a Micrograph representing a double immunostaining of the presynaptic marker synaptophysin ( blue ) and the inhibitory postsynaptic marker gephyrin ( red ) in the BLA. b Use of the spot colocalization function in Imaris to identify the synaptophysin ( blue ) and gephyrin ( red ) spot pairs in the vicinity of 0.6 μm, which defined neurochemical inhibitory synapses. c Higher magnification image of synaptophysin ( blue ) and gephyrin ( red ) spot pairs. d Use of the spot detection function of Imaris software to reconstruct the neurochemical inhibitory synapses in 3D. e 3D reconstruction of SYN SERT+ boutons within SERT+ fibers ( green ) apposed to within 0.6 μm presynaptic specialization of a neurochemical inhibitory synapse ( blue ). f 3D reconstruction of SYN SERT+ boutons in SERT+ fibers ( green ) orientated toward the postsynaptic specialization of a neurochemical inhibitory synapse ( red ). g Quantification of the density of putative inhibitory triads. ..

    Article Title: Mapping the connectivity of serotonin transporter immunoreactive axons to excitatory and inhibitory neurochemical synapses in the mouse limbic brain.
    Article Snippet: .. In this study, we have adapted a semi-automated method combining multi-step immunolabeling and high-resolution confocal imaging to reconstruct in 3D a total of 195.43 mm of SERT-immunoreactive axons and map the distribution of synaptophysin-immunoreactive boutons forming synaptic triads with excitatory or inhibitory neurochemical Fig. 5 3D-reconstruction and quantification of excitatory 5-HTergic triads throughout the limbic brain. a Micrograph representing double immunostaining of the presynaptic marker synaptophysin (blue) and the excitatory postsynaptic marker PSD95 (purple) in the BLA. b The use of the spot colocalization function in Imaris to identify the synaptophysin (blue) and PSD95 (purple) spot pairs in the vicinity of 0.6 lm, which defined neurochemical excitatory synapses. c Higher magnification of synaptophysin (blue) and PSD95 (purple) spot pairs. d The use of the spot detection function of Imaris software to reconstruct the neurochemical excitatory synapses in 3D. e 3D reconstruction of SYNSERT? boutons within SERT? fibers (green) apposed to within 0.6 lm of the presynaptic specialization of a neurochemical excitatory synapse (blue). f 3D reconstruction of SYNSERT? boutons in SERT? fibers (green) orientated toward the postsynaptic specialization of a neurochemical excitatory synapse (purple). g Quantification of the density of putative excitatory triads. ..

    Article Title: Mapping the connectivity of serotonin transporter immunoreactive axons to excitatory and inhibitory neurochemical synapses in the mouse limbic brain.
    Article Snippet: .. Among the brain regions analyzed, we found that the highest proportions of SYNSERT? boutons engaged in triads were in the BLA and CeA of the amygdala, reaching 61 Fig. 7 3D-reconstruction and quantification of inhibitory 5-HTergic triads throughout the limbic brain. a Micrograph representing a double immunostaining of the presynaptic marker synaptophysin (blue) and the inhibitory postsynaptic marker gephyrin (red) in the BLA. b Use of the spot colocalization function in Imaris to identify the synaptophysin (blue) and gephyrin (red) spot pairs in the vicinity of 0.6 lm, which defined neurochemical inhibitory synapses. c Higher magnification image of synaptophysin (blue) and gephyrin (red) spot pairs. d Use of the spot detection function of Imaris software to reconstruct the neurochemical inhibitory synapses in 3D. e 3D reconstruction of SYNSERT? boutons within SERT? fibers (green) apposed to within 0.6 lm presynaptic specialization of a neurochemical inhibitory synapse (blue). f 3D reconstruction of SYNSERT? boutons in SERT? fibers (green) orientated toward the postsynaptic specialization of a neurochemical inhibitory synapse (red). g Quantification of the density of putative inhibitory triads. ..

    Marker:

    Article Title: Mapping the connectivity of serotonin transporter immunoreactive axons to excitatory and inhibitory neurochemical synapses in the mouse limbic brain
    Article Snippet: .. Fig. 7 3D-reconstruction and quantification of inhibitory 5-HTergic triads throughout the limbic brain. a Micrograph representing a double immunostaining of the presynaptic marker synaptophysin ( blue ) and the inhibitory postsynaptic marker gephyrin ( red ) in the BLA. b Use of the spot colocalization function in Imaris to identify the synaptophysin ( blue ) and gephyrin ( red ) spot pairs in the vicinity of 0.6 μm, which defined neurochemical inhibitory synapses. c Higher magnification image of synaptophysin ( blue ) and gephyrin ( red ) spot pairs. d Use of the spot detection function of Imaris software to reconstruct the neurochemical inhibitory synapses in 3D. e 3D reconstruction of SYN SERT+ boutons within SERT+ fibers ( green ) apposed to within 0.6 μm presynaptic specialization of a neurochemical inhibitory synapse ( blue ). f 3D reconstruction of SYN SERT+ boutons in SERT+ fibers ( green ) orientated toward the postsynaptic specialization of a neurochemical inhibitory synapse ( red ). g Quantification of the density of putative inhibitory triads. ..

    Article Title: Mapping the connectivity of serotonin transporter immunoreactive axons to excitatory and inhibitory neurochemical synapses in the mouse limbic brain.
    Article Snippet: .. In this study, we have adapted a semi-automated method combining multi-step immunolabeling and high-resolution confocal imaging to reconstruct in 3D a total of 195.43 mm of SERT-immunoreactive axons and map the distribution of synaptophysin-immunoreactive boutons forming synaptic triads with excitatory or inhibitory neurochemical Fig. 5 3D-reconstruction and quantification of excitatory 5-HTergic triads throughout the limbic brain. a Micrograph representing double immunostaining of the presynaptic marker synaptophysin (blue) and the excitatory postsynaptic marker PSD95 (purple) in the BLA. b The use of the spot colocalization function in Imaris to identify the synaptophysin (blue) and PSD95 (purple) spot pairs in the vicinity of 0.6 lm, which defined neurochemical excitatory synapses. c Higher magnification of synaptophysin (blue) and PSD95 (purple) spot pairs. d The use of the spot detection function of Imaris software to reconstruct the neurochemical excitatory synapses in 3D. e 3D reconstruction of SYNSERT? boutons within SERT? fibers (green) apposed to within 0.6 lm of the presynaptic specialization of a neurochemical excitatory synapse (blue). f 3D reconstruction of SYNSERT? boutons in SERT? fibers (green) orientated toward the postsynaptic specialization of a neurochemical excitatory synapse (purple). g Quantification of the density of putative excitatory triads. ..

    Article Title: Mapping the connectivity of serotonin transporter immunoreactive axons to excitatory and inhibitory neurochemical synapses in the mouse limbic brain.
    Article Snippet: .. Among the brain regions analyzed, we found that the highest proportions of SYNSERT? boutons engaged in triads were in the BLA and CeA of the amygdala, reaching 61 Fig. 7 3D-reconstruction and quantification of inhibitory 5-HTergic triads throughout the limbic brain. a Micrograph representing a double immunostaining of the presynaptic marker synaptophysin (blue) and the inhibitory postsynaptic marker gephyrin (red) in the BLA. b Use of the spot colocalization function in Imaris to identify the synaptophysin (blue) and gephyrin (red) spot pairs in the vicinity of 0.6 lm, which defined neurochemical inhibitory synapses. c Higher magnification image of synaptophysin (blue) and gephyrin (red) spot pairs. d Use of the spot detection function of Imaris software to reconstruct the neurochemical inhibitory synapses in 3D. e 3D reconstruction of SYNSERT? boutons within SERT? fibers (green) apposed to within 0.6 lm presynaptic specialization of a neurochemical inhibitory synapse (blue). f 3D reconstruction of SYNSERT? boutons in SERT? fibers (green) orientated toward the postsynaptic specialization of a neurochemical inhibitory synapse (red). g Quantification of the density of putative inhibitory triads. ..

    Immunolabeling:

    Article Title: Mapping the connectivity of serotonin transporter immunoreactive axons to excitatory and inhibitory neurochemical synapses in the mouse limbic brain.
    Article Snippet: .. In this study, we have adapted a semi-automated method combining multi-step immunolabeling and high-resolution confocal imaging to reconstruct in 3D a total of 195.43 mm of SERT-immunoreactive axons and map the distribution of synaptophysin-immunoreactive boutons forming synaptic triads with excitatory or inhibitory neurochemical Fig. 5 3D-reconstruction and quantification of excitatory 5-HTergic triads throughout the limbic brain. a Micrograph representing double immunostaining of the presynaptic marker synaptophysin (blue) and the excitatory postsynaptic marker PSD95 (purple) in the BLA. b The use of the spot colocalization function in Imaris to identify the synaptophysin (blue) and PSD95 (purple) spot pairs in the vicinity of 0.6 lm, which defined neurochemical excitatory synapses. c Higher magnification of synaptophysin (blue) and PSD95 (purple) spot pairs. d The use of the spot detection function of Imaris software to reconstruct the neurochemical excitatory synapses in 3D. e 3D reconstruction of SYNSERT? boutons within SERT? fibers (green) apposed to within 0.6 lm of the presynaptic specialization of a neurochemical excitatory synapse (blue). f 3D reconstruction of SYNSERT? boutons in SERT? fibers (green) orientated toward the postsynaptic specialization of a neurochemical excitatory synapse (purple). g Quantification of the density of putative excitatory triads. ..

    Imaging:

    Article Title: Mapping the connectivity of serotonin transporter immunoreactive axons to excitatory and inhibitory neurochemical synapses in the mouse limbic brain.
    Article Snippet: .. In this study, we have adapted a semi-automated method combining multi-step immunolabeling and high-resolution confocal imaging to reconstruct in 3D a total of 195.43 mm of SERT-immunoreactive axons and map the distribution of synaptophysin-immunoreactive boutons forming synaptic triads with excitatory or inhibitory neurochemical Fig. 5 3D-reconstruction and quantification of excitatory 5-HTergic triads throughout the limbic brain. a Micrograph representing double immunostaining of the presynaptic marker synaptophysin (blue) and the excitatory postsynaptic marker PSD95 (purple) in the BLA. b The use of the spot colocalization function in Imaris to identify the synaptophysin (blue) and PSD95 (purple) spot pairs in the vicinity of 0.6 lm, which defined neurochemical excitatory synapses. c Higher magnification of synaptophysin (blue) and PSD95 (purple) spot pairs. d The use of the spot detection function of Imaris software to reconstruct the neurochemical excitatory synapses in 3D. e 3D reconstruction of SYNSERT? boutons within SERT? fibers (green) apposed to within 0.6 lm of the presynaptic specialization of a neurochemical excitatory synapse (blue). f 3D reconstruction of SYNSERT? boutons in SERT? fibers (green) orientated toward the postsynaptic specialization of a neurochemical excitatory synapse (purple). g Quantification of the density of putative excitatory triads. ..



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    The nuclear translocation of S protein and S mRNA includes both the outer surface and inside of the nucleus. Separate slides (see ) were imaged under a Leica Stellaris confocal microscope (Leica) using a 63x oil objective. The images were then deconvolved using Huygen Essential deconvolution software (Scientific Volume Imaging). Using the surface rendering function of an image processing IMARIS software. (A) S mRNA (red) on the nuclear surface (top) and inside the nucleus (bottom). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (B) S protein (green) on the nuclear surface (top image) and inside the nucleus (bottom image). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (C) The total distribution of S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment. (D) The total <t>colocalization</t> between S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment.
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    The nuclear translocation of S protein and S mRNA includes both the outer surface and inside of the nucleus. Separate slides (see ) were imaged under a Leica Stellaris confocal microscope (Leica) using a 63x oil objective. The images were then deconvolved using Huygen Essential deconvolution software (Scientific Volume Imaging). Using the surface rendering function of an image processing IMARIS software. (A) S mRNA (red) on the nuclear surface (top) and inside the nucleus (bottom). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (B) S protein (green) on the nuclear surface (top image) and inside the nucleus (bottom image). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (C) The total distribution of S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment. (D) The total <t>colocalization</t> between S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment.
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    The nuclear translocation of S protein and S mRNA includes both the outer surface and inside of the nucleus. Separate slides (see ) were imaged under a Leica Stellaris confocal microscope (Leica) using a 63x oil objective. The images were then deconvolved using Huygen Essential deconvolution software (Scientific Volume Imaging). Using the surface rendering function of an image processing IMARIS software. (A) S mRNA (red) on the nuclear surface (top) and inside the nucleus (bottom). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (B) S protein (green) on the nuclear surface (top image) and inside the nucleus (bottom image). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (C) The total distribution of S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment. (D) The total <t>colocalization</t> between S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment.
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    The nuclear translocation of S protein and S mRNA includes both the outer surface and inside of the nucleus. Separate slides (see ) were imaged under a Leica Stellaris confocal microscope (Leica) using a 63x oil objective. The images were then deconvolved using Huygen Essential deconvolution software (Scientific Volume Imaging). Using the surface rendering function of an image processing IMARIS software. (A) S mRNA (red) on the nuclear surface (top) and inside the nucleus (bottom). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (B) S protein (green) on the nuclear surface (top image) and inside the nucleus (bottom image). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (C) The total distribution of S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment. (D) The total <t>colocalization</t> between S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment.
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    Image Search Results


    The nuclear translocation of S protein and S mRNA includes both the outer surface and inside of the nucleus. Separate slides (see ) were imaged under a Leica Stellaris confocal microscope (Leica) using a 63x oil objective. The images were then deconvolved using Huygen Essential deconvolution software (Scientific Volume Imaging). Using the surface rendering function of an image processing IMARIS software. (A) S mRNA (red) on the nuclear surface (top) and inside the nucleus (bottom). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (B) S protein (green) on the nuclear surface (top image) and inside the nucleus (bottom image). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (C) The total distribution of S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment. (D) The total colocalization between S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment.

    Journal: Frontiers in Microbiology

    Article Title: Nuclear translocation of spike mRNA and protein is a novel feature of SARS-CoV-2

    doi: 10.3389/fmicb.2023.1073789

    Figure Lengend Snippet: The nuclear translocation of S protein and S mRNA includes both the outer surface and inside of the nucleus. Separate slides (see ) were imaged under a Leica Stellaris confocal microscope (Leica) using a 63x oil objective. The images were then deconvolved using Huygen Essential deconvolution software (Scientific Volume Imaging). Using the surface rendering function of an image processing IMARIS software. (A) S mRNA (red) on the nuclear surface (top) and inside the nucleus (bottom). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (B) S protein (green) on the nuclear surface (top image) and inside the nucleus (bottom image). White arrows indicate S protein on the nuclear surface (top image) or inside the nucleus (bottom image). (C) The total distribution of S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment. (D) The total colocalization between S mRNA and S protein in the cells. The data were obtained by combining multiple images from an independent experiment.

    Article Snippet: To confirm the physical apposition between S mRNA and the nucleus by comparing their distributions in fluorescent images, we used the spot-to-spot colocalization function in Imaris image analysis software (Oxford Instruments).

    Techniques: Translocation Assay, Microscopy, Software, Imaging

    Colocalization between S mRNA and S protein inside infected cells. The images (see ) were analyzed by using the surface rendering and colocalization features of IMARIS. S protein and S mRNA distribution and colocalization in the cytoplasm (top panel), on the nuclear surface (middle panel) and inside the nucleus (bottom panel). The specific region of colocalization is indicated by a white spot. Scale bar 0.5 μm.

    Journal: Frontiers in Microbiology

    Article Title: Nuclear translocation of spike mRNA and protein is a novel feature of SARS-CoV-2

    doi: 10.3389/fmicb.2023.1073789

    Figure Lengend Snippet: Colocalization between S mRNA and S protein inside infected cells. The images (see ) were analyzed by using the surface rendering and colocalization features of IMARIS. S protein and S mRNA distribution and colocalization in the cytoplasm (top panel), on the nuclear surface (middle panel) and inside the nucleus (bottom panel). The specific region of colocalization is indicated by a white spot. Scale bar 0.5 μm.

    Article Snippet: To confirm the physical apposition between S mRNA and the nucleus by comparing their distributions in fluorescent images, we used the spot-to-spot colocalization function in Imaris image analysis software (Oxford Instruments).

    Techniques: Infection